FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10388940
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT399100.3841585378296535No Hit
AGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGA167130.16087300533066895No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG165800.15959279772527324No Hit
GGAGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCT136760.1316399940706174No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG124060.11941545528225209No Hit
GAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGAT123130.11852027252058439No Hit
GCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGG117650.11324543216151021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)