FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10505851
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT397300.3781702215270329No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT233790.22253313891468668No Hit
GGACTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTA183930.17507387074117078No Hit
GCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAA173650.16528884713860875No Hit
TGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTA135000.1284998235745015No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG127890.12173216619957773No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)