FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982823

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982823
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7036362
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN376710.5353760934983163No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT347730.4941900374085358No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA120480.17122484602128202No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT119760.170201589969362No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG118670.168652494001872No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC113040.1606512001514419No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG98650.14020029100265163No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT84450.12001940775645142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)