FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982825

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982825
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7029019
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT343030.48801973646678154No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN223270.31764034213024606No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA121000.17214350964195715No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT120290.17113341136223986No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG118440.16850146514044137No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC111770.15901223200563266No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG97170.13824119695792542No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT84510.12023014875902312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)