FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982829

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982829
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7667162
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN421380.549590578626094No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG173160.2258462779317823No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT130270.16990641387256458No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC121380.15831151083021333No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT111890.14593404965227028No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG97130.12668311951671296No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA95190.12415284821163293No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT85950.1121014529235198No Hit

[OK]Adapter Content

Adapter graph