FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7665668
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN250200.32639034197672007No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG171390.2235812978073144No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT129580.16903941052495358No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC121530.15853804260763707No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT110260.14383612752339392No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG96550.12595118912011322No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA95650.12477712314177968No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT85080.11098837048512929No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)