FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14690001
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT430710.2931994354527273No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN284200.19346492896766992No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG198870.13537779881703207No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC167530.11404355928907016No Hit
CAGAGACCCAAGCAGCTGGAGGCTCTGTGTGTGGGTCGCTGATTTCTTGG161570.10998637780895999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)