FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10094312
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT601120.5955036856399921No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG228340.2262066003111455No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN200100.19823044898949033No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA160200.15870323802157096No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC148700.1473106834819451No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG102020.1010668186202289No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT101820.10086868723693107No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)