FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10022891
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT592680.5913263947497782No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG226170.2256534566723314No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN199050.19859539528066303No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA157540.1571801988069111No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC147530.1471930603655173No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG102340.10210626854068351No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT101000.10076932892914829No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN100430.1002006307361818No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)