FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9993564
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT583820.5841959885382232No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG223570.2237139823190205No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN190670.19079279424237439No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA157420.15752138076065755No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC145850.1459439295130346No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT101480.10154535459021427No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG101120.10118512274499868No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)