FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12073535
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT425140.35212553738403873No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC338100.28003397513652795No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC277590.22991609333968882No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN228770.18948054567282904No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT188000.155712473604458No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA179160.1483906743136952No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG164020.1358508506415064No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG158140.13098069455217548No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT151460.1254479321921873No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG147280.12198581442800308No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG127900.10593417752133075No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC125540.10397948902289181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)