FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7690144
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN332930.43293077476832686No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG173470.2255744495811782No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT131180.17058198129969998No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC122080.1587486528210655No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT112100.14577100246757407No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG96980.1261094720723045No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA94850.1233396929888439No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT86690.11272870833107937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)