FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7089269
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTACAGCACCCGGTATTCCCAGGCGGTCTCCCATCCAAGTACTAACCA170280.24019401718287176No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTAT114310.16124370509850874TruSeq Adapter, Index 19 (97% over 40bp)
CCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCCATC86530.1220577185038401No Hit
CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT81500.11496248766974422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)