FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001983088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9913202
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCT144270.14553319906121148No Hit
GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGG144040.145301185227538No Hit
GCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGG104790.10570752013325262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)