FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001983089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9913202
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT767140.7738569233230596No Hit
AGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGA353810.3569078890957735No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG352650.3557377323694201No Hit
GGAGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCT213840.21571233996845823No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN201280.20304236713828688No Hit
GCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGG172070.17357661026174992No Hit
GAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGAT152960.15429928695087622No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA140120.14134686249710235No Hit
CATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGGA139320.14053985785823792No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC119850.12089938245987523No Hit
AGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGGAGAG107640.10858247415920709No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC106980.10791669533214394No Hit
CAGAGACCCAAGCAGCTGGAGGCTCTGTGTGTGGGTCGCTGATTTCTTGG105950.106877676859606No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA99510.10038128951674746No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)