FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001983093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9800480
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT758520.7739620916526537No Hit
AGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGA348350.35544177428044343No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG346780.3538398119275791No Hit
GGAGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCT209270.21353035769676587No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN189660.1935211336587596No Hit
GCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGG170660.17413432811454133No Hit
GAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGAT149730.15277823127030513No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA134780.137523876381565No Hit
CATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGGA134290.13702390087016147No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC117850.12024921228348No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC106890.10906608655902568No Hit
AGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGGAGAG104150.1062703051279121No Hit
CAGAGACCCAAGCAGCTGGAGGCTCTGTGTGTGGGTCGCTGATTTCTTGG102360.10444386397400944No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA100850.10290312311233736No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)