FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001983097

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983097
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10916246
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT417680.38262237769284424No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN209030.19148524135494932No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG156220.14310780464273157No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA130340.1194000208496584No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC123790.1133997896346418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)