FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001983099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10899299
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT422330.38748363541545194No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN202710.18598443808175186No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG154730.14196325837102No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA130560.11978752027997396No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC123550.11335591399043185No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)