FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001983107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10665356
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT550380.5160446589874731No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC354700.3325721147986059No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN236890.22211166697107906No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG236400.22165223551843935No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA226670.21252923953030728No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG198220.18585408682091814No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC196300.1840538656187379No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT183980.1725024462380815No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT127840.1198647283784995No Hit
CGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCG121560.11397650486303504No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG121510.1139296241025616No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT112700.10566923410714091No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA110060.10319392995414312No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC108700.10191877326926546No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT108340.10158123179385668No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)