FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001983109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10521564
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT539430.5126899384920341No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC347300.33008400652222425No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG231220.21975820324811024No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA226640.21540523823264296No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN223760.21266800258972907No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG197970.18815643757905195No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC192490.18294808642517404No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT177250.16846354781475453No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT125200.11899371614334142No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG121950.11590482175463648No Hit
CGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCG120740.11475480261299556No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN117680.11184648974239951No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT111600.10606788116291456No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA108780.10338767126256135No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC108010.10265584089969894No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT106240.1009735814941581No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)