FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001983297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6318090
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT362410.5736068970210934No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN339700.5376624897714342No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA167460.2650484560998656No Hit
GCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAA139410.22065212746257173No Hit
TGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTA137740.21800892358291826No Hit
GGACTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTA132430.20960448489970862No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT130580.20667638479350564No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT120020.18996247283593617No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC113640.1798644843615713No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG108230.1713017699969453No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT94380.149380588120777No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA91860.14539204094908428No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG89400.1414984591862414No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC80110.12679464838265994No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT75660.11975138055963115No Hit
CAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAAG71110.11254983705518598No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT69210.10954259910827481No Hit
TGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGC65450.10359143348701902No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT64150.10153384962860611No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)