FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001983299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6311642
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT362240.5739235526983311No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN198710.31483091087865883No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA164810.26112064023910103No Hit
GCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAA138090.21878617323352625No Hit
TGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTA137080.21718595573069574No Hit
GGACTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTA129300.20485952783760553No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT129230.20474862167404298No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT119240.1889207277599078No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC110660.17532680085467459No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG106820.16924280559638838No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT93400.14798050966769027No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA90040.14265701381668985No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG88140.13964670366285034No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC77160.12225027972118824No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT75040.11889140733900941No Hit
CAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAAG71850.11383725502808936No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT70080.11103291346372308No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT64350.10195445178924913No Hit
TGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGC64320.10190692057629377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)