FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001983367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9579413
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT224190.23403312916981445No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG136440.14243043910936923No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC134130.1400190178667524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)