FastQCFastQC Report
Wed 8 May 2024
EGAF00001983393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9058297
Total Bases905.8 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGACCCAAGCAGCTGGAGGCTCTGTGTGTGGGTCGCTGATTTCTTGG197290.217800321627785No Hit
CCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAG134740.1487476067521301No Hit
GCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGG111780.12340067895764513No Hit
AGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGA109580.12097196636409692No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)