FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001983397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4388945
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA86020.19599243098284438No Hit
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC75280.1715218577585274No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT47700.10868215482308391No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)