FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001983415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12245371
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT218970.17881859193976238No Hit
GTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTTTAAAC193610.1581087253297593No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC180680.14754963324508502No Hit
GGCAAGTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTT149760.12229927537516012No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA146700.11980037191196574No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC136520.11148702640369165No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT128740.10513360518027588No Hit

[OK]Adapter Content

Adapter graph