FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001983417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12270420
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT221360.18040132285610436No Hit
GTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTTTAAAC194690.15866612552789552No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC176470.14381740804308246No Hit
GGCAAGTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTT150740.12284828066194964No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA147330.1200692396837272No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC139070.11333760376580426No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT129520.10555465909072388No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)