FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001983419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12351639
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT223780.18117433645850564No Hit
GTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTTTAAAC196330.1589505651841023No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC184260.14917858269659598No Hit
GGCAAGTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTT152880.12377304744738735No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA150990.12224288614652679No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC139880.11324812844675917No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT130100.1053301509216712No Hit

[OK]Adapter Content

Adapter graph