FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001983425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6321390
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT366030.5790340415636435No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN270490.4278963962039995No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA166870.263976751948543No Hit
TGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTA140620.22245107484271656No Hit
GCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAA139910.2213279041476637No Hit
GGACTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTA131560.2081187840016199No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT127860.2022656409428939No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT118510.1874745902404376No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC112330.17769825940180878No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG108340.17138635648172315No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT91550.1448257424395584No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA91230.1443195246615064No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG89210.14112402493755327No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC78680.12446629617853036No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT76670.12128661576014137No Hit
CAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAAG72630.11489561631223512No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT70920.11219051506076987No Hit
TGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGC64840.10257237727778225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)