FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001983525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13744797
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT505040.3674408578024106No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA371510.27029136916318225No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC239600.17432050833489937No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTAC199460.1451167303525836No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG190690.13873613411678615No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG181350.13194083550306346No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT173150.12597494164519127No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA171830.12501457824368015No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT158870.11558555575611629No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT153420.11162041898472563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)