FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001983527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13752999
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT499810.3634189168486088No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA366190.2662619258534084No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC242020.17597616345351294No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTAC204430.1486439430410778No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG191210.1390314941490216No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG184340.1340362200273555No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA175580.12766670018662837No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT173350.12604523566096384No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT162610.11823602982883952No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT153400.11153930862643122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)