FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001983529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13766613
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT505230.3669965880496532No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA367880.26722622332740814No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC241720.17558421958981488No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTAC202790.14730565898816217No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG190210.13816760883740975No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG185260.1345719531739579No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA173960.1263636887301183No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT173440.125985963286685No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT158070.11482127085289606No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT155300.11280915647153007No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)