FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001983547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9277021
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCC269930.29096624875593147No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT151990.1638349207143112No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC147440.15893032903558157No Hit
CAGGAGGCAGCGCTCTCGGGACGTCTCCACCATGGCCTGGGCTCTGCTAT127210.1371237598793837No Hit
GGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCT99190.10692009859630586No Hit
CAAGAGGCAGCGCTCTCGGGACGTCTCCACCATGGCCTGGGCTCTGCTGC98100.10574515245788492No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)