FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001983555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9500890
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC167750.17656240625878206No Hit
TGAAGATCCTGGTGTCGCCATGGGCCGCCGCCCCGCCCGTTGTTACCGGT119740.1260302982141673No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC104070.10953710652370462No Hit
CCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAG96810.10189571713807866No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)