FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001983587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13722004
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT353450.2575789950214269No Hit
GGCAAGTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTT217880.1587814724438209No Hit
CGCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAA177320.12922310764520983No Hit
AGTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTTTAAA169030.12318171602340298No Hit
GTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTTTAAAC166080.12103188426413518No Hit
GTTTGCCGCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAA163010.1187946017214395No Hit
CCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAG153850.1121191919197808No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)