FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001983599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9301577
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG178750.19217171453829818Illumina Single End PCR Primer 1 (100% over 50bp)
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT133680.14371756531177457No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA104040.1118520010101513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)