FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001983601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9281237
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG171180.18443662197183414Illumina Single End PCR Primer 1 (100% over 50bp)
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT132250.14249178207603147No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA105000.11313147159155616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)