FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001983671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12787195
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT288470.22559286849070495No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA145730.1139655725903922No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA142130.11115025617424307No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC137330.1073965009527109No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC132540.10365056605455693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)