FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001983673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12774108
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT286080.22395301495806985No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA144640.11322904111974004No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA142510.11156160571055138No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC135240.10587040598059763No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC132750.10392115050225034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)