FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001983835

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983835
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11320510
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC178340.15753707209304174No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT162790.14380094183035924No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG156020.13782064588962864No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA150630.13305937630018436No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG133330.11777737928768225No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA118120.10434158885067898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)