FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001983837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11300186
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC177600.1571655546200744No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT158340.14012158737918118No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG154540.13675881087267058No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA149370.13218366494144432No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG129980.11502465534638104No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA119260.10553808583327742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)