FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001983839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11264506
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC178320.15830254784364267No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT163680.14530597258326286No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG155830.13833718052083244No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA148320.13167022149040533No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG128330.11392421469703154No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA120430.10691103542401238No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)