FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001983853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13535945
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA277860.20527565677904278No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT218700.1615698054328678No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC189100.1397021042860325No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT185430.13699080485329987No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA178730.1320410211477662No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG167380.12365593979585467No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT165000.12189765841985913No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG160550.1186101155109599No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC151470.11190205042943067No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC144310.10661243082769618No Hit
CACTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTA140420.1037386011837371No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)