FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001983885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7465531
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC90530.12126397974906274No Hit
CCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAG88900.1190806119484334No Hit
AGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGA84840.11364228478858368No Hit
CAGAGACCCAAGCAGCTGGAGGCTCTGTGTGTGGGTCGCTGATTTCTTGG76700.10273884067991948No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)