FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001983898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10306734
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCCATC157920.15322021505551614No Hit
CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT118880.11534206665273403No Hit
GGGTGACTTCGCAGGCGTAGAGTTTGTGTTTCTCGTAGTCTGCTTTGCTC114280.11087896515035706No Hit
GTCGGTTCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCCCATGG107790.10458211107417734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)