FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001983905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9004751
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA206820.22967875513714925No Hit
GGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACA147730.16405784013350286No Hit
GGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAAC121720.13517308807317382No Hit
TGACGACCTACGCACACGAGAACATGCCTCTCGCAAAGGATCTCCTTCAT108290.12025873897012809No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)