FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001983979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001983979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13558294
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA277110.2043841208930858No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT220710.16278596702505493No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC190540.14053390492933698No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT186430.13750255009959217No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA180200.13290757672019798No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG168550.12431505025632282No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT164750.12151233776166825No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG162840.12010360595514451No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC152080.11216750425975422No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC146260.10787492880741485No Hit
CACTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTA140930.10394375575570201No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)