FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001984015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7510053
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT572530.7623514774130089No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN461500.6145096446057039No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG336110.4475467749694976No Hit
CCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGCAGGGTC177620.23650964913296885No Hit
CCTGAACGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGCAGGGTCGGGC168620.22452571240176333No Hit
CACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGCAGGGTCG168600.22449908143124955No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAACCAGCCACTTTAATT128340.1708909377869903No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC127430.16967922862861287No Hit
CCCTGAACGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGCAGGGTCGGG99270.13218282214519658No Hit
GCGAGAATGAAGACTATTCTCAGCAATCAGACTGTCGACATTCCAGAAAA90630.12067824288323929No Hit
GGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCA89640.1193600098428067No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC85450.11378082152016769No Hit
GTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCA82780.11022558695657673No Hit
CGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCG82250.10951986623796131No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)