FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001984067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13729791
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT656570.47820829901926404No Hit
TGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTA249320.18159052821707192No Hit
GCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAA244660.17819644887529607No Hit
GGCAAGTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTT199400.14523163535409972No Hit
AGTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTTTAAA152520.1110869058385521No Hit
GGACTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTA150400.10954281824100601No Hit
GTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTTTAAAC143470.10449539982072559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)