FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001984069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001984069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13680980
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT653930.47798476424934466No Hit
TGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTA247630.1810031152739058No Hit
GCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAA240880.17606925819641575No Hit
GGCAAGTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTT199350.14571324568853986No Hit
AGTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTTTAAA158320.11572270407529284No Hit
GGACTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTA150640.11010907113379305No Hit
GTGGAACCACTGGCTTGGTGGATTTTGCTAGATTTTTCTGATTTTTAAAC145330.1062277702328342No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)